Publications

UPDATED LIST OF PUBLICATIONS AT GOOGLE SCHOLAR

 

  1. Oita, S., Carey, J., Kline, I., Ibáñez, A., Yang, N., Hom, E. F. Y., Carbone, I., U’Ren, J. M., A. E. Arnold.  2020.  Methodological approaches frame insights into endophyte richness and community composition.  Microbial Ecology In Press
  2. Gell, RM, Horn, BW. and I Carbone. 2020. Genetic map and heritability of Aspergillus flavus. Fungal Genetics and Biology, 144,103478.  https://doi.org/10.1016/j.fgb.2020.103478.
  3. Crouch, J. A., Beirn, L. A., Boehm, M., Carbone, I., Clarke, B. B., Kerns, J. P., Malapi-Wight, M., Mitchell, T. K., Reddyvari-Channarayappa, V. and L. P. Tredway 2020. Genome resources for seven fungal isolates that cause dollar spot disease in turfgrass, including Clarireedia jacksonii and C. monteithiana. Plant Disease https://doi.org/10.1094/PDIS-06-20-1296-A.
  4. Crouch, J. A., Beirn, L.A., Carbone, I., Clarke, B.B., Kerns, J.P., Malapi-Wig.ht, M., and L.P. Tredway. (2020) Data from: Genome resources for seven fungal isolates that cause turfgrass dollar spot disease, including Clarireedia jacksonii and C. monteithiana. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1519041.
  5. Luis, J. M. Carbone, I., Payne, G. A., Bhatnagar, D., Cary, J. W., Moore, G. G., Lebarb, M. D., Wei, Q., Mack, B. and P. S. Ojiambo. 2020. Characterization of morphological changes within stromata during sexual reproduction in Aspergillus flavus. Mycologia 112: 908-920, DOI:10.1080/00275514.2020.1800361
  6. Oita, S., Ibáñeza, A., Lutzoni, F., Miadlikowska, J., Geml, J., Lewis, L. A., Hom, E. F. Y., Carbone, I. and A. E. Arnold. 2020. Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale. Nature Communications Biology In Press
  7. O'Keeffe, K.R., Halliday, F. W., Jones, C. D. Carbone, I. and C. E Mitchell. 2020. Parasites as niche modifiers for the microbiome: A field test with multiple parasites. bioRxiv 2020.03.31.018713; doi: https://doi.org/10.1101/2020.03.31.018713
  8. Andrews, M., Carbone, I., Binder, A., Breakfield, N., Duckworth, O., Francis, K., Harrris, S.L., Kinkel, L., Leach, J., Maloney, G., Miclaus, K., Shank, E., Stulberg, E., Young, C. and S. Yu-Su. 2020. Agriculture and the Microbiome. Issue Paper 68. Council for Agricultural Science and Technology (CAST), Ames, Iowa. USA. https://www.cast-science.org/publication/agriculture-and-the-microbiome/
  9. U'Ren JM, Lutzoni, F, Miadlikowska, J, Zimmerman, NB, Carbone, I, May, G and AE Arnold. 2019. Host availability drives distributions of fungal endophytes in the imperiled boreal realm. Nature Ecology and Evolution 3, 1430–1437. https://doi.org/10.1038/s41559-019-0975-2
  10. Lewis MH, Carbone I, Luis JM, Payne GA, Bowen KL, Hagan AK, Kemerait R, Heiniger R and PS Ojiambo. 2019. Biocontrol strains differentially shift the genetic structure of indigenous soil populations of Aspergillus flavus. Front. Microbiol. 10:1738. doi: 10.3389/fmicb.2019.01738
  11. Carbone, I., White, J. B., Miadlikowska, J., Arnold, A. E., Miller, M. A., Magain, N., U'Ren, J. M. and F. Lutzoni. 2019. T-BAS version 2.1: Tree-Based Alignment Selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees. Microbiology Resource Announcements 8:e00328-19. https://doi.org/10.1128/MRA.00328-19.
  12. Molo, M., Heiniger, R., Boerema, L. and I. Carbone.  2019.  A response to the letter to the editor from Ortega-Beltran and Bandyopadhyay. Agronomy Journal 111:1–3 doi:10.2134/agronj2019.04.0281
  13. Cullen, M., Jacob, M. E., Cornish, V., VanderSchel, I. Q., Cotter, H. V. T., Cubeta, M. A., Carbone, I. and B. C. Gilger. 2019. Multi-locus DNA sequence analysis, antifungal agent susceptibility, and fungal keratitis outcome in horses from Southeastern United States.  PLoS One 14(3): e0214214. https://doi.org/10.1371/journal.pone.0214214
  14. Gell, R. M. and I. Carbone. 2019. HPLC quantitation of aflatoxin B1 from fungal mycelium culture. Journal of Microbiol Methods 158:14-17. doi: 10.1016/j.mimet.2019.01.008.
  15. Koehler, A. M., Larkin, M. T., Rogers, L. W., Carbone, I., Cubeta, M. A. and H. D. Shew. 2019.  Identification and characterization of Septoria steviae as the causal agent of Septoria leaf spot disease of stevia in North Carolina. Mycologia 111: 456-465. doi:10.1080/00275514.2019.1584503.
  16. Molo, M., Heiniger, R., Boerema, L. and I. Carbone.  2019. Trial summary on the comparison of various non-toxigenic strains of Aspergillus flavus on mycotoxin levels and yield in maize. Agronomy Journal 111:942-946. DOI: 10.2134/agronj2018.07.0473
  17. Molo, M., Heiniger, R., Boerema, L. and I. Carbone.  2018.  Management practices for controlling mycotoxins in corn:  A three-year summary. AG-852. Raleigh, NC: NC State Extension. http://content.ces.ncsu.edu/management-practices-for-controlling-mycotoxins-in-corn  
  18. Ojiambo, P. S., Battilani, P., Cary, J. W., Blum, B. H. and I. Carbone. 2018. Cultural and genetic approaches to manage aflatoxin contamination: Recent insights provide opportunities for improved control.  Phytopathology 108:1024-1037. doi: 10.1094/PHYTO-04-18-0134-RVW.
  19. Salgado-Salazar, C., Beirn, L. A., Ismaiel, A., Boehm, M. J., Carbone, I., Orshinsky, A. M., Putman, A. I., Tredway, L. P., Clarke, B. B., and J. A. Crouch. 2018. Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass. Fungal Biology 122:761-773. doi: 10.1016/j.funbio.2018.04.004.
  20. Blanco-Meneses, M., Carbone, I. and J. B. Ristaino.  2018. Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina into North America and Europe.  Molecular Ecology 27:737-751. doi: 10.1111/mec.14453.
  21. Drott, M. T. Lazzaro, B. P. Brown, D. L. Carbone, I. and M. G. Milgroom.  2017. Balancing selection for aflatoxin in Aspergillus flavus is maintained through interference competition with, and fungivory by insects.  Proc. R. Soc. B., doi: 10.1098/rspb.2017.2408.
  22. *This research was highlighted in http://www.sciencemag.org/news/2017/12/bugs-may-be-causing-common-crop-mold-produce-deadly-toxin 
  23. Moore, G. G., Olarte, R. A., Horn, B. W., Elliott, J. L., Singh, R., O’Neal, C. J. and I. Carbone.  2017.  Global population structure and adaptive evolution of aflatoxin producing fungi.  Ecology and Evolution, DOI: 10.1002/ece3.3464.
  24. Thomas, A., Carbone, I., Choe, K., Quesada-Ocampo, L. M. and P. S. Ojiambo.  2017. Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis. Ecology and Evolution, DOI: 10.1002/ece3.3194.
  25. O’Keeffe, K. R., Carbone, I., Jones, C. D., and C. E. Mitchell.  2017. Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants. Current Opinion in Plant Biology 38: 78-83. DOI: 10.1016/j.pbi.2017.04.014
  26. Thomas, A., Carbone, I., Lebeda, A., and Ojiambo, P. S. 2017. Virulence structure within populations of Pseudoperonospora cubensis in the United States. Phytopathology 107: 777-785.
  27. Carbone, I., White, J. B., Miadlikowska, J., Arnold, A. E., Miller, M. A., Kauff, F., U'Ren, J. M., May, G. and F. Lutzoni. 2017.  T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads, and metadata visualization; an example with the Pezizomycotina tree of life. Bioinformatics 33: 1160-1168. DOI: 10.1093/bioinformatics/btw808
  28. Thomas, A., Carbone, I., Cohen, Y., and Ojiambo, P. S. 2017. Occurrence and distribution of mating types of Pseudoperonospora cubensis in the United States. Phytopathology 107: 313-321.  DOI: http://dx.doi.org/10.1094/PHYTO-06-16-0236-R
  29. Horn, B.W., Gell, R.M., Singh, R., Sorensen, R. B. and I Carbone.  2016.  Sexual reproduction in Aspergillus flavus sclerotia: acquisition of novel alleles from soil populations and uniparental mitochondrial inheritance. PloS One 11(1): e0146169. PMID: 26731416
  30. Runa, F., Carbone, I., Bhatnagar, D. and G. A. Payne. 2015.  Nuclear heterogeneity in conidial populations of Aspergillus flavus.  Fungal Genetics and Biology 84: 62–72.  PMID: 26362651
  31. Call, A., Sun, Y-X., Yu, Y., Pearman, P. B., Thomas, D. T., Trigiano, R. N., Carbone, I. and J. Xiang 2015.  Genetic structure and post-glacial expansion of Cornus florida L. (Cornaceae): Integrative evidence from phylogeography, population demographic history, and species distribution modeling.  Journal of Systematics and Evolution DOI: 10.1111/jse.12171.
  32. Putman, A. I., Tredway, L. P. and I. Carbone. 2015.  Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale. Fungal Genetics and Biology 81: 25-40.  PMID: 26049125
  33. Lassiter, E. S., Russ, C., Nusbaum, C., Zeng, Q., Saville, A., Olarte, R., Carbone, I., Hu, C-H, Seguin-Orlando, A., Samaniego, J.A., Thorne, J. L. and J. B. Ristaino.  2015. Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species. Current Genetics 61(4): 567-77 DOI: 10.1007/s00294-015-0480-3.  PMID: 25754775
  34. Meyers, M., R. Heiniger, L. Boerema, I. Carbone. 2015. The Use of Management Practices to Reduce Mycotoxin Contamination in Corn. AG-807. Raleigh, NC: North Carolina Cooperative Extension Service. http://content.ces.ncsu.edu/the-use-of-management-practices-to-reduce-mycotoxin-contamination-in-corn/. 
  35. Olarte, R. A., Worthington, C.J., Horn, B.W., Moore, G.G., Singh, R., Monacell, J.W., Dorner, J.T., Stone, E.A., Xie, D-Y. and I. Carbone.  2015. Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus. Molecular Ecology 24: 1889-1909.  PMID: 25773520
  36. Olarte, R. A., Horn, B.W., Singh, R. and I. Carbone.  2015. Sexual recombination in Aspergillus tubingensis. Mycologia 107: 307–312.  PMID: 25572097
  37. Putman, A.I. and I. Carbone. 2014. Challenges in analysis and interpretation of microsatellite data for population genetic studies.  Ecology and Evolution 4: 4399–4428.  PMID: 25540699
  38. Barnes, I., Wingfield, M. J., Carbone, I., Kirisits, T. and B. D. Wingfield. 2014.  Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity.  Ecology and Evolution 4: 3642–3661. PMID: 25478155
  39. Oono, R., Lutzoni, F., Arnold, A.E., Kaye, L., U'Ren, J. M., May, G. and I. Carbone. 2014.  Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species. American Journal of Botany 101:1362-1374.  PMID: 25156984
  40. U'Ren, J. M., Riddle, J.M., Monacell, J.T., Carbone, I., Miadlikowska, J. and A. E. Arnold.  2014.  Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi. Molecular Ecology Resources 14: 1032–1048. PMID: 24628864
  41. Monacell, J. T. and I. Carbone. 2014.  Mobyle SNAP Workbench: A web-based analysis portal for population genetics and evolutionary genomics. Bioinformatics 30:1488-1490 doi: 10.1093/bioinformatics/btu055 PMID: 24489366
  42. Miller, J. D., Schaafsma, A. W., Bhatnagar, D., Bondy, G., Carbone, I., Harris, L., Harrison, G., Munkvold, G., Oswald, I., Pestka, J.J., Sharpe, L., Sumarah, M., Tittlemier, S. and T. Zhou.  2014.  Mycotoxins that affect the North American Agri-Food sector: state of the art and directions for the future. World Mycotoxin Journal 7 (1): 63-82.
  43. Horn, B. W., Sorensen, R. B., Lamb, M. C., Sobolev, V. S., Olarte, R. A., Worthington C. J. and I. Carbone. 2014.  Sexual reproduction in Aspergillus flavus sclerotia naturally produced in corn.  Phytopathology 104:75-85. (cover page)  PMID: 23883157
  44. Moore, G. G., Elliott, J. L., Singh, R., Horn, B.W., Dorner, J. W., Stone, E. A., Chulze, S. N., Barros, G. G., Naik, M. K., Wright, G. C., Hell, K. and I. Carbone. 2013.  Sexuality generates diversity in the aflatoxin gene cluster: evidence on a global scale. PLoS Pathogens 9(8): e1003574. doi:10.1371/journal.ppat.1003574
  45. Horn, B. W., Olarte, R. A., Peterson, S. W. and I. Carbone. 2013. Sexual reproduction in Aspergillus tubingensis from section Nigri. Mycologia 105: 1153–1163. DOI: 10.3852/13-101.
  46. Putman, A. I., Carbone, I., and L. P. Tredway.  2013.  Development and characterization of 14 microsatellite loci for the plant pathogenic fungus Sclerotinia homoeocarpa Molecular Ecology Resources 13:966–968. 
  47. Bradshaw, R. E., Slot, J. C., Moore, G. G., Chettri, P., de Wit, P. J.G.M., Ehrlich, K. C., Ganley, A. R. D., Olson, M. A., Rokas, A., Carbone, I. and M. P. Cox.  2013.  Fragmentation of an aflatoxin-like gene cluster in a forest pathogen. New Phytologist 198: 525–535.
  48. Wei, W., Ayub, Q., Chen, Y., McCarthy, S., Hou, Y., Carbone, I., Xue, Y., and C. Tyler-Smith.  2013.  A calibrated human Y-chromosomal phylogeny based on resequencing.  Genome Research 23: 388-395.
  49. Olarte, R. A., Horn, B. W., Dorner, J. W., Monacell, J. T., Singh, R., Stone, E. A. and I. Carbone.  2012.  Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis. Molecular Ecology 21: 1453–1476.
  50. *Paper is the topic of a News and Views Perspective article entitled “Sex, Drugs and Recombination: The Wild Life of Aspergillus” by Matthew C. Fisher and Daniel A. Henk, Molecular Ecology 21: 1305–1306, 2012.
  51. Abbas, H. K., Weaver, M. A., Horn, B. W., Carbone, I., Monacell, J. T. and W. T. Shier.  2011. Selection of Aspergillus flavus isolates for biological control of aflatoxins in corn.  Toxin Reviews 30: 59-70.
  52. Olson, H., Carbone, I. and M. Benson. 2011.  Phylogenetic history of Phytophthora cryptogea and P. drechsleri isolates from floriculture crops in North Carolina greenhouses.  Phytopathology 101:1373-1384.
  53. Litvintseva, A. P., Carbone, I., Rossouw, J., Thakur, R., Govender, N. P., and T. G. Mitchell. 2011. Evidence that the human pathogenic fungus Cryptococcus neoformans var. grubii may have evolved in Africa. PLoS One 6(5): e19688. doi:10.1371/journal.pone.0019688.
  54. Wu, F., Bhatnagar, D., T. Bui-Klimke, I. Carbone, R. Hellmich, G. Munkvold, P. Paul, G. Payne, E. Takle. 2011. Climate Change Impacts on Mycotoxin Risks in US Maize. World Mycotoxin Journal 4: 79-93.
  55. Kaye, A.C., J.W. Moyer, E.J. Parks, I. Carbone, and M.A. Cubeta. 2011. Population genetic analysis of tomato spotted wilt virus on peanut in North Carolina and Virginia. Phytopathology 101:147-153.
  56. Horn, B. W., Moore, G. G. and I. Carbone. 2011. Sexual reproduction in aflatoxin-producing Aspergillus nomius.  Mycologia 103: 174–183. DOI: 10.3852/10-115.
  57. Arnold, A. E., Carbone, I., Lutzoni, F. and G. May.  2011. A multidimensional study of endophytic fungal diversity.  IMA Fungus 2: 2-4.
  58. Moore, G. G., Singh, R., Horn, B. W., and I. Carbone. 2009. Recombination and lineage-specific gene loss in the aflatoxin gene cluster of Aspergillus flavus. Molecular Ecology 18: 4870-4887.
  59. Parks, R., Carbone, I., Murphy, P and C. Cowger.  2009. Population genetic analysis of an eastern U.S. wheat powdery mildew population reveals geographic subdivision and recent common ancestry with U.K. and Israeli populations.  Phytopathology 99: 840-849.
  60. Lourenço Jr., V., Moya, A., González-Candelas, F., Carbone, I., Maffia, L. A. and E. S. G. Mizubuti.  2009. Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches. Phytopathology 99: 765-774.
  61. Horn, B. W., Moore, G. G. and I. Carbone. 2009. Sexual reproduction in Aspergillus flavus.  Mycologia 101: 423-429.
  62. Goss, E. M., Carbone, I., and N. J. Grünwald. 2009. Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum. Molecular Ecology 18: 1161-1174.
  63. Paper highlighted on ARS USDA web site: http://www.ars.usda.gov/is/pr/2009/090327.htm
  64. Horn, B. W., Ramirez-Prado, J. H. and I. Carbone. 2009. The sexual state of Aspergillus parasiticus.  Mycologia 101: 275-280.
  65. Horn, B. W., Ramirez-Prado, J. H. and I. Carbone. 2009. Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus.  Fungal Genetics and Biology 46: 169-175. (cover page) (recommended by Faculty of 1000 Biology)
  66. *Amongst the 10 most downloaded articles from Fungal Genetics and Biology in Jan - Apr 2009
  67. *Faculty of 1000 Biology: evaluations for Horn et al Fungal Genetics and Biology 2009 46:169-175 http://www.f1000biology.com/article/id/1145047
  68. Ramirez-Prado, J. H., Moore, G. G., Horn, B. W. and I. Carbone. 2008. Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus.  Fungal Genetics and Biology 45: 1292-1299.
  69. Brown DE, Powell A. J., Carbone I. and R. A Dean. 2008. GT-Miner: a graph-theoretic data miner, viewer and model processor. Bioinformation 3(5): 235-237.
  70. Charlton, N. D., Carbone, I., Tavantzis, S. M., and M. A. Cubeta. 2008. Phylogenetic relatedness of the M2 double-stranded RNA in Rhizoctonia fungi. Mycologia 100: 555-564.
  71. Parks, R., Carbone, I. Murphy, J. P., Marshall, D. S. and C. Cowger. 2008. Virulence structure of the Eastern U.S. wheat powdery mildew population.  Plant Disease 92: 1074-1082.
  72. Powell, A. J. Conant, G. C., Brown, D. E. Carbone, I. and R. A. Dean. 2008. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens.  BMC Genomics 9: 147.
  73. Clark, C. M. and I. Carbone. 2008. Chloroplast DNA phylogeography in long lived Huon Pine (Lagarostrobos franklinii), a Tasmanian rainforest conifer. Canadian Journal of Forest Research 38: 1576-1589.
  74. Carbone, I., Jakobek, J. L., Ramirez-Prado, J. H. and B. W. Horn. 2007. Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus. Molecular Ecology 16: 4401-4417. (recommended by Faculty of 1000 Biology)
  75. *Faculty of 1000 Biology: evaluations for Carbone I et al Mol Ecol 2007 Oct 16 (20) :4401-17 http://www.f1000biology.com/article/id/1098738/evaluation
  76. Carbone, I., Ramirez-Prado, J. H., Jakobek, J. L., and B. W. Horn. 2007. Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster. BMC Evolutionary Biology 7:111.
  77. *This research was highlighted on the fungal genomes and comparative genomics blog by Jason Stajich, "Evolution of aflatoxin gene cluster." Fungal Genomes and Comparative Genomics, http://fungalgenomes.org/blog/2007/09/evolution-of-aflatoxin-gene-cluster/ [Posted on September 29th, 2007 by Jason Stajich].
  78. Moser, J. M., Carbone, I., Arasu, P. and G. Gibson. 2007. Impact of population structure on genetic diversity of a potential vaccine target in the canine hookworm (Ancyclostoma caninum).  Journal of Parasitology 93: 796-805.
  79. Deng, J., Carbone, I. and R. A Dean. 2007. The evolutionary history of cytochrome P450 genes in four filamentous ascomycetes. BMC Evolutionary Biology 7: 30.
  80. Gómez-Alpizar, L., I. Carbone, and J. B. Ristaino. 2007. An Andean origin of Phytophthora infestans inferred from nuclear and mitochondrial gene genealogies. Proc Nat. Acad. Sci. 104: 3306-3311.
  81. Malvárez, G, Carbone, I., Grünwald N. J., Subbarao, K. V., Schafer, M. and L. M. Kohn. 2007. New populations of Sclerotinia sclerotiorum from lettuce in California and peas and lentils in Washington.  Phytopathology 97: 512-525.
  82. Aylor, D. L., Price, E.W. and I. Carbone. 2006. SNAP: Combine and Map modules for multilocus population genetic analysis.  Bioinformatics 22: 1399-1401.
  83. Charles, L., I. Carbone, K. G. Davies, D. Bird, M. Burke, B. R. Kerry, and C. H. Opperman. 2005. Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci.  Journal of Bacteriology 187: 5700-5708.
  84. Dean, R.A., Talbot, N.J., Ebbole, D.J., Farman, M.L., Mitchell, T., Orbach, M.J., Thon, M., Kulkarni, R., Xu, J-R.,Pan, H., Read, N.D., Lee, Y-H., Carbone, I., Brown, D., Oh, Y.Y., Donofrio, N., Jeong, J.S., Soanes, D.M., Djonovic, S., Kolomiets, E., Rehmeyer, C., Li, W., Harding, M., Kim S., Lebrun M-H., Bohnert, H., Coughlan, S., Butler, J., Calvo, S., Ma, L-J., Nicol, R., Purcell, S., Nusbaum, C., Galagan, J.E., Birren, B.W. 2005. The genome sequence of the rice blast fungus Magnaporthe grisea.  Nature 434: 980-986.
  85. Price, E.W. and I. Carbone. 2005. SNAP: workbench management tool for evolutionary population genetic analysis. Bioinformatics 21: 402-404.
  86. Carbone, I., Y. Liu, B. I. Hillman and M. G. Milgroom. 2004. Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent. Genetics 166: 1611-1629.
  87. Phillips, D.V., I. Carbone, S. E. Gold, and L. M. Kohn. 2002. Phylogeography and genotype - symptom associations in early and late season infections of canola by Sclerotinia sclerotiorum.  Phytopathology 92: 785-793.
  88. Carbone, I. and L. M. Kohn. 2001. Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation.  Molecular Ecology 10: 2409-2422.
  89. Carbone, I. and L. M. Kohn. 2001. A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. Molecular Ecology 10: 947-964.
  90. Carbone, I., and L. M. Kohn. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes.  Mycologia 91: 553-556.
  91. Carbone, I., J. B. Anderson, and L. M. Kohn. 1999. Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies.  Evolution 53: 11-21.
  92. Carbone, I., J. B. Anderson, and L. M. Kohn. 1995. A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum.  Current Genetics 27: 166-176.
  93. Carbone, I., and L. M. Kohn. 1993. Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae.  Mycologia 85:  415-427.
  94. Kohn, L. M., E. Stasovski, I. Carbone, J. Royer, and J. B. Anderson. 1991. Mycelial incompatibility and molecular markers identify genetic variability in field populations of Sclerotinia sclerotiorum.  Phytopathology 81: 480-485.
  95. Kohn, L. M., I. Carbone, and J. B. Anderson. 1990. Mycelial interactions in Sclerotinia sclerotiorum.  Experimental Mycology 14: 255-267.